NucPosSimulator, the R-Script with the Binary Variable algorithm and NucPosViewer are published under the GNU General Public License, version 3 (GPL-3.0). NucPosSimulator uses the Mersenne Twister pseudo random number generator distributed under its own license (please see license file provided with source code and binaries).

If you use NucPosSimulator or our Binary Variable approach please cite:

Robert Schöpflin, Vladimir B. Teif, Oliver Müller, Christin Weinberg, Karsten Rippe and Gero Wedemann: Modeling nucleosome position distributions from experimental nucleosome positioning maps. Bioinformatics, 29 (19), 2380-2386, 2013.

We appreciate all suggestions, questions and bug reports. Contact details can be found here.

NucPosSimulator - Binaries

Windows 32 bit
Linux 64 bit
Mac OS X
(Universal Binary)

NucPosSimulator - Source Code

Source Code
(with Makefiles)

Binary Variable Analysis

R-Script, test data


NucPosViewer jar-Archive
(System independent)